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White adipose tissue is a reservoir for memory T cells and promotes protective memory responses to infection
ImmunityHan SJ, Zaretsky AG, Andrade-Oliveira V, Collins N, Dzutsev A, Shaik J, Morais de Fonseca D, Harrison OJ, Tamoutounour S, Byrd AL, Smelkinson M, Bouladoux N, Bliska JB, Brenchley JM, Brodsky IE, Belkaid Y -
Staphylococcus aureus and Staphylococcus epidermidis strain diversity underlying pediatric atopic dermatitis
Sci Transl MedByrd AL, Deming C, Cassidy SKB, Harrison OJ, Yang WI, Conlan S, NISC Comparative Sequencing Program, Belkaid Y, Segre JA, Kong HH -
Temporal Stability of the Human Skin Microbiome
CellOh J, Byrd AL, Park M, NISC Comparative Sequencing Program, Kong HH, Segre JA -
Infectious disease. Adapting Koch's postulates
ScienceByrd AL, Segre JA -
Microbiota-Dependent Sequelae of Acute Infection Compromise Tissue-Specific Immunity
CellMorais de Fonseca D, Hand TW, Seong-Ji H, Gerner MY, Zaretsky AG, Byrd AL, Harrison OJ, Ortiz AM, Quinones M, Trinchieri G, Brenchley JM, Brodsky IE, Germain RN, Randolph GJ, Belkaid Y -
Bone-Marrow-Resident NK Cells Prime Monocytes for Regulatory Function during Infection
ImmunityAskenase MH, Seong-Ji H, Byrd AL, Morais de Fonseca D, Bouladoux N, Wilhelm C, Konkel JE, Hand TW, Lacerda-Queiroz N, Su X, Trinchieri G, Grainger JR, Belkaid Y -
Elucidating microbial codes to distinguish individuals
Proc Natl Acad Sci U S AByrd AL, Segre JA -
Integrating host gene expression and the microbiome to explore disease pathogenesis
Genome BiolByrd AL, Segre JA -
Commensal-dendritic-cell interaction specifies a unique protective skin immune signature
NatureNaik S, Bouladoux N, Lineham JL, Han SJ, Harrison OJ, Wilhelm C, Conlan S, Himmelfarb S, Byrd AL, Deming C, Quinones M, Brenchley JM, Kong HH, Tussiwand R, Murphy KM, Merad M, Segre JA, Belkaid Y -
Biogeography and individuality shape function in the human skin metagenome
NatureOh J, Byrd AL, Deming C, Conlan S, NISC Comparative Sequencing Program, Kong HH, Segre JA -
PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples
MicrobiomeHong C, Manimaran S, Shen Y, Perez-Rogers JF, Byrd AL, Castro-Nallar E, Crandall KA, Johnson WE -
Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data
BMC BioinformaticsByrd AL, Perez-Rogers JF, Manimaran S, Castro-Nallar E, Toma I, McCaffrey T, Siegel M, Benson G, Crandall KA, Johnson WE
