-
Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors
Commun Med (Lond)Naresh Doni Jayavelu, Hady Samaha, Sonia Tandon Wimalasena, Annmarie Hoch, Jeremy P Gygi, Gisela Gabernet, Al Ozonoff, Shanshan Liu, Carly E Milliren, Ofer Levy, Lindsey R Baden, Esther Melamed, Lauren I R Ehrlich, Grace A McComsey, Rafick P Sekaly, Charles B Cairns, Elias K Haddad, Joanna Schaenman, Albert C Shaw, David A Hafler, Ruth R Montgomery, David B Corry, Farrah Kheradmand, Mark A Atkinson, Scott C Brakenridge, Nelson I Agudelo Higuita, Jordan P Metcalf, Catherine L Hough , William B Messer, Bali Pulendran, Kari C Nadeau, Mark M Davis, Linda N Geng, Ana Fernandez Sesma, Viviana Simon, Florian Krammer, Monica Kraft, Chris Bime, Carolyn S Calfee, David J Erle, Charles R Langelier, IMPACC Network, Leying Guan, Holden T Maecker, Bjoern Peters, Steven H Kleinstein, Elaine F Reed, Alison D Augustine , Joann Diray-Arce, Patrice M Becker, Nadine Rouphael, Matthew C Altman -
IL-13 Modulates Antiviral Effector and Proinflammatory Pathways in Rhinovirus-Infected Pediatric Bronchial Epithelium
bioRxivPatricia C Dela Cruz, Basilin Benson, Naresh Doni Jayavelu, Weston T Powell, Lucille M Rich, Elizabeth R Vanderwall, Camile R Gates, Maria P White, Nyssa B Samanas, Kourtnie Whitfield, Teal S Hallstrand, Steven F Ziegler , Gail H Deutsch, Matthew C Altman, Jason S Debley -
Bronchial Epithelial Transcriptome Reveals Dysregulated Interferon and InflammatoryResponses to Rhinovirus in Exacerbation-Prone Pediatric Asthma
JCI InsightNaresh Doni Jayavelu, Basilin Benson, Patricia C Dela Cruz, Weston T Powell, Lucille M Rich, Elizabeth R Vanderwall, Camile R Gates, Andrew J Nagel, Maria P White, Nyssa B Samanas, Kourtnie Whitfield, Teal S Hallstrand, Steven F Ziegler , Matthew C Altman, Jason S Debley -
Minimalistic transcriptomic signatures permit accurate early prediction of COVID-19 mortality
JCI InsightRithwik Narendra, Emily C Lydon, Hoang Van Phan, Natasha Spottiswoode, Lucile P Neyton, Joann Diray-Arce, IMPACC Network, COMET Consortium, EARLI Consortium, Patrice M Becker, Seunghee Kim-Schulze, Annmarie Hoch, Harry Pickering, Patrick van Zalm, Charles B Cairns, Matthew C Altman, Alison D Augustine , Steve Bosinger, Walter Eckalbar, Leying Guan, Naresh Doni Jayavelu, Steven H Kleinstein, Florian Krammer, Holden T Maecker, Al Ozonoff, Bjoern Peters, Nadine Rouphael, Ruth R Montgomery, Elaine Reed, Joanna Schaenman, Hanno Steen, Ofer Levy, Sidney C Haller, David Erle, Carolyn M Hendrickson, Matthew F Krummel, Michael A Matthay, Prescott Woodruff, Elias K Haddad, Carolyn S Calfee, Charles R Langelier -
Reframing Residual Inflammatory Pathways in Pediatric Asthma-Reply
JAMA PediatrMatthew C Altman, Daniel J Jackson -
Type 2 immune responses are associated with less severe COVID-19 in a hospitalized cohort
J Allergy Clin Immunol GlobNaresh Doni Jayavelu, Jingjing Qi, Carly E Milliren, Al Ozonoff, Shanshan Liu, Ofer Levy, Lindsey R Baden, Esther Melamed, Grace A McComsey, Charles B Cairns, Joanna Schaenman, Albert C Shaw, David A Hafler, David B Corry, Farrah Kheradmand, Mark A Atkinson, Scott C Brakenridge, Nelson I Agudelo Higuita, Jordan P Metcalf, Catherine L Hough , William B Messer, Bali Pulendran, Kari C Nadeau, Mark M Davis, Linda N Geng, Ana Fernandez Sesma, Viviana Simon, Florian Krammer, Chris Bime, Carolyn S Calfee, Steven E Bosinger, Walter Eckalbar, Hanno Steen, Holden T Maecker, IMPACC Network, Alison D Augustine , Joann Diray-Arce, Elias K Haddad, Rafick-Pierre Sekaly, Monica Kraft, Prescott G Woodruff, David J Erle, Lauren I R Ehrlich, Ruth R Montgomery, Patrice M Becker, Matthew C Altman, Slim Fourati -
A multi-omics recovery factor predicts long COVID in the IMPACC study
J Clin InvestGisela Gabernet, Jessica Maciuch, Jeremy P Gygi, John F Moore, Annmarie Hoch, Caitlin Syphurs, Tianyi Chu, Naresh Doni Jayavelu, David B Corry, Farrah Kheradmand, Lindsey R Baden, Rafick-Pierre Sekaly, Grace A McComsey, Elias K Haddad, Charles B Cairns, Nadine Rouphael, Ana Fernandez-Sesma, Viviana Simon, Jordan P Metcalf, Nelson I Agudelo Higuita, Catherine L Hough , William B Messer, Mark M Davis, Kari C Nadeau, Bali Pulendran, Monica Kraft, Chris Bime, Elaine F Reed, Joanna Schaenman, David J Erle, Carolyn S Calfee, Mark A Atkinson, Scott C Brakenridge, Esther Melamed, Albert C Shaw, David A Hafler, Alison D Augustine , Patrice M Becker, Al Ozonoff, Steven E Bosinger, Walter Eckalbar, Holden T Maecker, Seunghee Kim-Schulze, Hanno Steen, Florian Krammer, Kerstin Westendorf, IMPACC Network, Bjoern Peters, Slim Fourati, Matthew C Altman, Ofer Levy, Kinga K Smolen, Ruth R Montgomery, Joann Diray-Arce, Steven H Kleinstein, Leying Guan, Lauren I R Ehrlich -
Mepolizumab alters gene regulatory networks of nasal airway type-2 and epithelial inflammation in urban children with asthma
Nat CommunCourtney L Gaberino, R Max Segnitz, Kimberly A Dill-McFarland, Leonard B Bacharier, Agustin Calatroni, Michelle A Gill, Jeffrey Stokes, Andrew H Liu , Robyn T Cohen, Rajesh Kumar, Abigail Lang, Gurjit K Khurana Hershey, Michael G Sherenian, Edward M Zoratti, Stephen J Teach, Meyer Kattan , Patrice M Becker, Alkis Togias, William W Busse, Daniel J Jackson, Matthew C Altman -
MICBG406A polymorphism reduces risk of mechanical ventilation and death during viral acute lung injury
JCI InsightHarry Pickering, Narges Alipanah-Lechner, Ernie Chen, Dylan Duchen, Holden T Maecker, Seunghee Kim-Schulze, Ruth R Montgomery, Chris Cotsapas, Hanno Steen, Florian Krammer, Charles R Langelier, Ofer Levy, Lindsey R Baden, Esther Melamed, Lauren Ir Ehrlich, Grace A McComsey, Rafick P Sekaly, Charles B Cairns, Elias K Haddad, Albert C Shaw, David A Hafler, David B Corry, Farrah Kheradmand, Mark A Atkinson, Scott C Brakenridge, Nelson I Agudelo Higuita, Jordan P Metcalf, Catherine L Hough , William B Messer, Bali Pulendran, Kari C Nadeau, Mark M Davis, Ana Fernandez Sesma, Viviana Simon, Monica Kraft, Chris Bime, David J Erle, Joanna Schaenmann, Al Ozonoff, Bjoern Peters, Steven H Kleinstein, Alison D Augustine , Joann Diray-Arce, Patrice M Becker, Nadine Rouphael, Matthew C Altman, Steve Bosinger, Walter Eckalbar, IMPACC Network, Carolyn S Calfee, Oscar A Aguilar, Elaine F Reed, John R Greenland, Daniel R Calabrese -
Genetic contributions to epigenetic-defined endotypes of allergic phenotypes in children
Am J Hum GenetEmma E Thompson, Xiaoyuan Zhong, Peter Carbonetto, Andréanne Morin, Jason Willwerscheid, Cynthia M Visness, Leonard B Bacharier, Meyer Kattan , George T O'Connor, Katherine Rivera-Spoljaric, Robert A Wood, Diane R Gold, Gurjit K Khurana Hershey, Christine C Johnson, Rachel L Miller, Christine M Seroogy, Edward M Zoratti, Peter J Gergen, Albert M Levin, Matthew C Altman, Tina Hartert, Matthew Stephens, Daniel J Jackson, James E Gern, Christopher G McKennan, Carole Ober -
Inflammatory Pathways in Residual Asthma Exacerbations Among Mepolizumab-Treated Urban Children: A Secondary Analysis of a Randomized Clinical Trial
JAMA PediatrMatthew C Altman, Tomasz Janczyk, Ryan C Murphy, Naresh Doni Jayavelu, Agustin Calatroni, Meyer Kattan , Michelle A Gill, Jeffrey Stokes, Andrew H Liu , Gurjit K Khurana Hershey, Michael Sherenian, Rajesh Kumar, Rachel G Robison, Rebecca S Gruchalla, George T O'Connor, Edward M Zoratti, Stephen J Teach, Susan V Lynch, Kimberly A Dill-McFarland, Patrice M Becker, Alkis Togias, James E Gern, Leonard B Bacharier, William W Busse, Daniel J Jackson, Inner City Asthma Consortium and Childhood Asthma in Urban Settings Network -
Single-cell transcriptomic profiling of eosinophils and airway immune cells in childhood asthma
J Allergy Clin ImmunolNaresh Doni Jayavelu, Andrew H Liu , Courtney Gaberino, Kristy Freeman, Matthew Lawrance, Stephan Pribitzer, Clara Seifert, Cullen Dutmer, Alkis Togias, Patrice M Becker, William W Busse, Christine A Sorkness, Carmen Mikacenic, Kimberly A Dill-McFarland, Daniel J Jackson, Matthew C Altman -
Cockroach immunotherapy modulates dominant T cell responses independent of allergen extract content
J Allergy Clin ImmunolRicardo da Silva Antunes, Aaron Sutherland, Adam Abawi , April Frazier, Anna Pomés, Jill Glesner, Jay E Slater, Samuel T Mindaye, Kate Cho, Grace Zhou, Marie V Ozanne, Agustin Calatroni, Cynthia M Visness, Matthew C Altman, Robert A Wood, George T O'Connor, Jacqueline A Pongracic, Gurjit K Khurana Hershey, Carolyn M Kercsmar, Rebecca S Gruchalla, Michelle Gill, Daniel Searing, Andrew H Liu , Edward Zoratti, Meyer Kattan , Will Sheehan, Leonard B Bacharier, Stephen J Teach, Lisa M Wheatley , Alkis Togias, William W Busse, Daniel J Jackson, Alessandro Sette -
Airway Immune Signatures in Severe and Fatal Infection with COVID-19.
Am J Respir Cell Mol BiolDoni Jayavelu N, Qi JJ, Fourati S, Kheradmand F, Langelier CR, Ehrlich LIR, Diray-Arce J, Hoch A, Kraft M, Becker PM, Altman MC, Montgomery RR -
Early-life wheeze trajectories are associated with distinct asthma transcriptomes later in life
J Allergy Clin ImmunolKieran J Phelan, Krishna M Roskin, Jeffrey W Burkle, Wan-Chi Chang, Lisa J Martin , Jocelyn M Biagini, Latha Satish, David B Haslam, Daniel Spagna, Seth Jenkins, Elsie Parmar, Leonard B Bacharier, Tebeb Gebretsadik, Michelle Gill, Diane R Gold, Daniel J Jackson, Christine C Johnson, Susan V Lynch, Kathryn E McCauley, Chris G McKennan, Rachel Miller, Carole Ober, Dennis R Ownby, Patrick H Ryan, Nathan Schoettler, Sweta Singh, Cynthia M Visness, Matthew C Altman, James E Gern, Gurjit K Khurana Hershey, Environmental Influences on Child Health Outcomes–Children’s Respiratory and Environmental Workgroup